Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00345.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 452

Length: 754
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:201 original size:6 final size:6

Alignment explanation


    Indices: 168--199  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        158 CAACTACACT

                                          *      
        168 GGTTGG GGTTGG GGTTGG GGTTGG GGCTGG GG
          1 GGTTGG GGTTGG GGTTGG GGTTGG GGTTGG GG

        200 CTCCTCGAAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.03, G:0.69, T:0.28


Consensus pattern (6 bp):   
GGTTGG
Done.