Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00349.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3803
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:49 original size:6 final size:6

Alignment explanation


    Indices: 38--62  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         28 ATTAACCCTG

                                         
         38 CTCTTT CTCTTT CTCTTT CTCTTT C
          1 CTCTTT CTCTTT CTCTTT CTCTTT C

         63 ATTCAATTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (6 bp):   
CTCTTT

Done.