Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00363.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34


Found at i:1008 original size:18 final size:18

Alignment explanation


    Indices: 971--1027  Score: 53
    Period size: 18  Copynumber: 3.1  Consensus size: 18

        961 AGAATATAAG

                *              
        971 AAGAGAGAAAAAAATA-AA
          1 AAGAAAGAAAAAAA-AGAA

               *          *   
        989 AAGGAAGAAAAAAAGGAA
          1 AAGAAAGAAAAAAAAGAA

              *                
       1007 AATAAAGAAATAAAAAGAA
          1 AAGAAAGAAA-AAAAAGAA

              
       1026 AA
          1 AA

       1028 AATTAAATTG


Statistics
Matches: 31,  Mismatches: 6, Indels: 3
        0.77            0.15        0.08

Matches are distributed among these distances:
  18   22  0.71
  19    9  0.29

ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05


Consensus pattern (18 bp):   
AAGAAAGAAAAAAAAGAA
Done.