Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00380.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:12 original size:7 final size:7

Alignment explanation


    Indices: 1--29  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

                   
          1 AGGATAC
          1 AGGATAC

                   
          8 AGGATAC
          1 AGGATAC

                   
         15 AGGATAC
          1 AGGATAC

                   
         22 AGGATAC
          1 AGGATAC

             
         29 A
          1 A

         30 CGAGCCTGGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14


Consensus pattern (7 bp):   
AGGATAC

Done.