Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00388.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3929
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29


Found at i:2118 original size:23 final size:22

Alignment explanation


    Indices: 2073--2118  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2063 TTTTCTAATA

                  *     *     *   
       2073 TTATCATTTTAATCCTAATTTT
          1 TTATCACTTTAACCCTAACTTT

                                   
       2095 TTATCACTTTAACCCCTAACTTT
          1 TTATCACTTTAA-CCCTAACTTT

             
       2118 T
          1 T

       2119 AAATTTTAAT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  22   11  0.55
  23    9  0.45

ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52


Consensus pattern (22 bp):   
TTATCACTTTAACCCTAACTTT
Done.