Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00417.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2619
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29


Found at i:462 original size:9 final size:9

Alignment explanation


    Indices: 450--474  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        440 CCTTCATCGT

                     
        450 CTTCTTCCA
          1 CTTCTTCCA

                     
        459 CTTCTTCCA
          1 CTTCTTCCA

                   
        468 CTTCTTC
          1 CTTCTTC

        475 GGCGGCCAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.08, C:0.44, G:0.00, T:0.48


Consensus pattern (9 bp):   
CTTCTTCCA
Done.