Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00418.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3338
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:2293 original size:43 final size:42

Alignment explanation


    Indices: 2231--2312  Score: 128
    Period size: 43  Copynumber: 1.9  Consensus size: 42

       2221 AAGACTTCGT

                          *                           
       2231 AATAACTCTATAGCGAGCTTTTCATTGACATCAGATAAAAAA
          1 AATAACTCTATAGCAAGCTTTTCATTGACATCAGATAAAAAA

                                    *       *       
       2273 AATAAGCTCTATAGCAAGCTTTTCGTTGACATTAGATAAA
          1 AATAA-CTCTATAGCAAGCTTTTCATTGACATCAGATAAA

       2313 CTGATTATAG


Statistics
Matches: 36,  Mismatches: 3, Indels: 1
        0.90            0.08        0.03

Matches are distributed among these distances:
  42    5  0.14
  43   31  0.86

ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30


Consensus pattern (42 bp):   
AATAACTCTATAGCAAGCTTTTCATTGACATCAGATAAAAAA
Done.