Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00419.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2974
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:277 original size:12 final size:12

Alignment explanation


    Indices: 260--293  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        250 ATACACATGT

                        
        260 ATGTATGGATGG
          1 ATGTATGGATGG

                        
        272 ATGTATGGATGG
          1 ATGTATGGATGG

            *  *      
        284 GTGGATGGAT
          1 ATGTATGGAT

        294 ATAGATATTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32


Consensus pattern (12 bp):   
ATGTATGGATGG
Done.