Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00424.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1368
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:262 original size:12 final size:12

Alignment explanation


    Indices: 245--288  Score: 88
    Period size: 12  Copynumber: 3.7  Consensus size: 12

        235 AGGAGACCCA

                        
        245 TAGCATGGAGTG
          1 TAGCATGGAGTG

                        
        257 TAGCATGGAGTG
          1 TAGCATGGAGTG

                        
        269 TAGCATGGAGTG
          1 TAGCATGGAGTG

                    
        281 TAGCATGG
          1 TAGCATGG

        289 TTCTTGGTAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   32  1.00

ACGTcount: A:0.25, C:0.09, G:0.41, T:0.25


Consensus pattern (12 bp):   
TAGCATGGAGTG
Done.