Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00424.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5189
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:1706 original size:12 final size:12

Alignment explanation


    Indices: 1689--1732  Score: 88
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       1679 AGGAGACCCA

                        
       1689 TAGCATGGAGTG
          1 TAGCATGGAGTG

                        
       1701 TAGCATGGAGTG
          1 TAGCATGGAGTG

                        
       1713 TAGCATGGAGTG
          1 TAGCATGGAGTG

                    
       1725 TAGCATGG
          1 TAGCATGG

       1733 TTCTTGGTCA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   32  1.00

ACGTcount: A:0.25, C:0.09, G:0.41, T:0.25


Consensus pattern (12 bp):   
TAGCATGGAGTG

Found at i:4563 original size:199 final size:199

Alignment explanation


    Indices: 4223--4617  Score: 754
    Period size: 199  Copynumber: 2.0  Consensus size: 199

       4213 TGCAGAACTT

                                                                             
       4223 GATTTTCTTGCAACCATTATTCTAGGTTAGGCAAGATTACTGAAGCCTTTCTCTTTGGACGAGGA
          1 GATTTTCTTGCAACCATTATTCTAGGTTAGGCAAGATTACTGAAGCCTTTCTCTTTGGACGAGGA

                                         *                                   
       4288 TGATGACTACTATAGCTCTAAAGTCAATCTGTAATTTTGTTGACCTTGGTGGGAATCCTGTATTA
         66 TGATGACTACTATAGCTCTAAAGTCAATCCGTAATTTTGTTGACCTTGGTGGGAATCCTGTATTA

                                                                             
       4353 ACCTTTGGTTAAAGGCATAATGTTGTCAAAGGACAAGCTAATGGACAAGGCCCATAGCACGGACT
        131 ACCTTTGGTTAAAGGCATAATGTTGTCAAAGGACAAGCTAATGGACAAGGCCCATAGCACGGACT

                
       4418 ACTC
        196 ACTC

                                                       *                     
       4422 GATTTTCTTGCAACCATTATTCTAGGTTAGGCAAGATTACTGATGCCTTTCTCTTTGGACGAGGA
          1 GATTTTCTTGCAACCATTATTCTAGGTTAGGCAAGATTACTGAAGCCTTTCTCTTTGGACGAGGA

                                                                             
       4487 TGATGACTACTATAGCTCTAAAGTCAATCCGTAATTTTGTTGACCTTGGTGGGAATCCTGTATTA
         66 TGATGACTACTATAGCTCTAAAGTCAATCCGTAATTTTGTTGACCTTGGTGGGAATCCTGTATTA

                                             *            *                  
       4552 ACCTTTGGTTAAAGGCATAATGTTGTCAAAGGAGAAGCTAATGGACGAGGCCCATAGCACGGACT
        131 ACCTTTGGTTAAAGGCATAATGTTGTCAAAGGACAAGCTAATGGACAAGGCCCATAGCACGGACT

             
       4617 A
        196 A

       4618 TAGCTTGGTT


Statistics
Matches: 192,  Mismatches: 4, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 199  192  1.00

ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Consensus pattern (199 bp):   
GATTTTCTTGCAACCATTATTCTAGGTTAGGCAAGATTACTGAAGCCTTTCTCTTTGGACGAGGA
TGATGACTACTATAGCTCTAAAGTCAATCCGTAATTTTGTTGACCTTGGTGGGAATCCTGTATTA
ACCTTTGGTTAAAGGCATAATGTTGTCAAAGGACAAGCTAATGGACAAGGCCCATAGCACGGACT
ACTC
Done.