Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00450.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 860
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34


Found at i:82 original size:23 final size:24

Alignment explanation


    Indices: 53--109  Score: 73
    Period size: 23  Copynumber: 2.5  Consensus size: 24

         43 ACCAAATCAG

                                    
         53 ATTTCCCCAATTTC-ATTCCCCCA
          1 ATTTCCCCAATTTCTATTCCCCCA

                           *      * 
         76 ATTT-CCCAATTTCTTTTCCCCTA
          1 ATTTCCCCAATTTCTATTCCCCCA

            *          
         99 TTTTCCCCAAT
          1 ATTTCCCCAAT

        110 GGCATCTTCC


Statistics
Matches: 29,  Mismatches: 3, Indels: 3
        0.83            0.09        0.09

Matches are distributed among these distances:
  22    9  0.31
  23   14  0.48
  24    6  0.21

ACGTcount: A:0.19, C:0.39, G:0.00, T:0.42


Consensus pattern (24 bp):   
ATTTCCCCAATTTCTATTCCCCCA

Found at i:365 original size:17 final size:17

Alignment explanation


    Indices: 343--380  Score: 67
    Period size: 17  Copynumber: 2.2  Consensus size: 17

        333 GCCCCAGTAA

                    *        
        343 CTTGCAGCTTTTACTTT
          1 CTTGCAGCCTTTACTTT

                             
        360 CTTGCAGCCTTTACTTT
          1 CTTGCAGCCTTTACTTT

                
        377 CTTG
          1 CTTG

        381 TGGACTTTAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.11, C:0.26, G:0.13, T:0.50


Consensus pattern (17 bp):   
CTTGCAGCCTTTACTTT

Done.