Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00458.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2136
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:1030 original size:137 final size:137

Alignment explanation


    Indices: 784--1207  Score: 758
    Period size: 137  Copynumber: 3.1  Consensus size: 137

        774 GAGTAGTCTC

                                    *          *                             
        784 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                *     *      
        849 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCTAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        914 ACTGTTA
        131 ACTGTTA

                                                                             
        921 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                        *    
        986 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1051 ACTGTTA
        131 ACTGTTA

                                                                             
       1058 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC

             *                          *           *                        
       1123 TATTATCTGAATAAGGGGCTAAGGCCCATTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1188 ACTGTTA
        131 ACTGTTA

              **         
       1195 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1208 AGGCCCAATA


Statistics
Matches: 276,  Mismatches: 11, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 137  276  1.00

ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Done.