Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00460.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5361
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:4426 original size:13 final size:13

Alignment explanation


    Indices: 4408--4433  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       4398 GTTTTTAACT

                         
       4408 TAAAAAATAAAAA
          1 TAAAAAATAAAAA

                         
       4421 TAAAAAATAAAAA
          1 TAAAAAATAAAAA

       4434 AACTGATGAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (13 bp):   
TAAAAAATAAAAA
Done.