Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00466.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 326

Length: 544
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34


Found at i:499 original size:18 final size:18

Alignment explanation


    Indices: 478--512  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        468 TTTTTGTGTG

                               
        478 TGTTGG-TGTTTTGTATTT
          1 TGTTGGTTGTTTT-TATTT

                             
        496 TGTTGGTTGTTTTTATT
          1 TGTTGGTTGTTTTTATT

        513 CAAATTCTAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18   10  0.62
  19    6  0.38

ACGTcount: A:0.06, C:0.00, G:0.26, T:0.69


Consensus pattern (18 bp):   
TGTTGGTTGTTTTTATTT
Done.