Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00472.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 366

Length: 611
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32


Found at i:426 original size:55 final size:55

Alignment explanation


    Indices: 342--453  Score: 215
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        332 TCAACTTGCT

                                                                   
        342 AAGGAGCTGGAGAATAAATATTCTAGAATTGCTGCCTGGAAACCTTTTGTTGACA
          1 AAGGAGCTGGAGAATAAATATTCTAGAATTGCTGCCTGGAAACCTTTTGTTGACA

                        *                                          
        397 AAGGAGCTGGAGGATAAATATTCTAGAATTGCTGCCTGGAAACCTTTTGTTGACA
          1 AAGGAGCTGGAGAATAAATATTCTAGAATTGCTGCCTGGAAACCTTTTGTTGACA

              
        452 AA
          1 AA

        454 ACTCCCCAAT


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29


Consensus pattern (55 bp):   
AAGGAGCTGGAGAATAAATATTCTAGAATTGCTGCCTGGAAACCTTTTGTTGACA
Done.