Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga13g00475.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 460
Length: 768
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Found at i:671 original size:145 final size:144
Alignment explanation
Indices: 402--695 Score: 527
Period size: 145 Copynumber: 2.0 Consensus size: 144
392 TTTTTCAAAG
*
402 ATATTGTGAAGAAGGTGATCTTGTTTGTCATTTGCAGCCAGGGAAGCTTAATGTTGTTGCTTTCT
1 ATATTGTGAAGAAGGTGATCTTGTTTGTCATTTGCAGCCAGGGAAGCTTAATGCTGTTGCTTTCT
467 CTTTGGATGACTGCTGCAACTACAACCCCTCCGTGATATGATTCTAGGCTGAGATCCTGCATCAG
66 CTTTGGATGACTGCTGCAACTACAACCCCTCCGTGATATGATTCTAGGCTGAGATCCTGCATCAG
532 CAATAACTTATATT
131 CAATAACTTATATT
* *
546 ATATTGTTGAAGAAGGTGATCTTGTTTGTCATTTGCAGCCATGGAAGCTTTATGCTGTTGCTTTC
1 ATATTG-TGAAGAAGGTGATCTTGTTTGTCATTTGCAGCCAGGGAAGCTTAATGCTGTTGCTTTC
*
611 TCTTTGGATGACTGCTGCAACTACAACCCCTCTGTGATATGATTC-AGGGCTGAGATCCTGCATC
65 TCTTTGGATGACTGCTGCAACTACAACCCCTCCGTGATATGATTCTA-GGCTGAGATCCTGCATC
675 AGCAATAACTTATATT
129 AGCAATAACTTATATT
691 ATATT
1 ATATT
696 ATATATTATG
Statistics
Matches: 144, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
144 7 0.05
145 137 0.95
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (144 bp):
ATATTGTGAAGAAGGTGATCTTGTTTGTCATTTGCAGCCAGGGAAGCTTAATGCTGTTGCTTTCT
CTTTGGATGACTGCTGCAACTACAACCCCTCCGTGATATGATTCTAGGCTGAGATCCTGCATCAG
CAATAACTTATATT
Done.