Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00477.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4205
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:2846 original size:12 final size:12

Alignment explanation


    Indices: 2829--2854  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       2819 TCTTGGTATT

                        
       2829 GAAGAAGATGAG
          1 GAAGAAGATGAG

                        
       2841 GAAGAAGATGAG
          1 GAAGAAGATGAG

              
       2853 GA
          1 GA

       2855 TATGGATGAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08


Consensus pattern (12 bp):   
GAAGAAGATGAG
Done.