Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00477.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4494
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2933 original size:19 final size:19

Alignment explanation


    Indices: 2909--2947  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2899 AACAACTCAG

                               
       2909 ATGTTTTTTCATTTTTCTT
          1 ATGTTTTTTCATTTTTCTT

                               
       2928 ATGTTTTTTCATTTTTCTT
          1 ATGTTTTTTCATTTTTCTT

             
       2947 A
          1 A

       2948 CTTTATTTGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.13, C:0.10, G:0.05, T:0.72


Consensus pattern (19 bp):   
ATGTTTTTTCATTTTTCTT

Found at i:3135 original size:12 final size:12

Alignment explanation


    Indices: 3118--3143  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       3108 TCTTGGTATT

                        
       3118 GAAGAAGATGAG
          1 GAAGAAGATGAG

                        
       3130 GAAGAAGATGAG
          1 GAAGAAGATGAG

              
       3142 GA
          1 GA

       3144 TATGGATGAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08


Consensus pattern (12 bp):   
GAAGAAGATGAG
Done.