Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00487.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 363

Length: 605
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33


Found at i:491 original size:147 final size:147

Alignment explanation


    Indices: 228--492  Score: 415
    Period size: 147  Copynumber: 1.8  Consensus size: 147

        218 TCCCATGGCC

                  *                                            *             
        228 TGGGGCGCTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTGCCAAGCATTCCCT
          1 TGGGGCCCTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTCCCAAGCATTCCCT

                        *       *                         *                  
        293 CAGTCCCCACAATCCCAACTGCAATTCCCCCTATCCCTTTCTCTTTTCCACCATTGCCATCTTTC
         66 CAGTCCCCACAACCCCAACTACAATTCCCCCTATCCCTTTCTCTTTCCCACCATTGCCATCTTTC

                             
        358 CCTAATCTCCCAAACCT
        131 CCTAATCTCCCAAACCT

                                          *    *                           * 
        375 TGGGGCCCTTCCTCCACTTCCTACCACATTTCCAAGAGGACTGCCCCCTCTCCCAAGCATTCCTT
          1 TGGGGCCCTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTCCCAAGCATTCCCT

                                   *     *    *                   
        440 CAGTCCCCACAACCCCAACTACAGTTCCCTCTATTCCTTTCT-TTTCCCCACCA
         66 CAGTCCCCACAACCCCAACTACAATTCCCCCTATCCCTTTCTCTTT-CCCACCA

        493 CCTTCTCGTT


Statistics
Matches: 106,  Mismatches: 11, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
 146    3  0.03
 147  103  0.97

ACGTcount: A:0.19, C:0.45, G:0.09, T:0.27


Consensus pattern (147 bp):   
TGGGGCCCTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTCCCAAGCATTCCCT
CAGTCCCCACAACCCCAACTACAATTCCCCCTATCCCTTTCTCTTTCCCACCATTGCCATCTTTC
CCTAATCTCCCAAACCT
Done.