Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00492.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 379

Length: 633
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.36


Found at i:226 original size:15 final size:15

Alignment explanation


    Indices: 206--255  Score: 75
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        196 CCCACCATTG

                           
        206 CCATCATTCCCTAAA
          1 CCATCATTCCCTAAA

                         * 
        221 CCATCATTCCCTAGA
          1 CCATCATTCCCTAAA

                           
        236 CCATCATTCCC-AAA
          1 CCATCATTCCCTAAA

                  
        250 GCCATC
          1 -CCATC

        256 CATACCATCA


Statistics
Matches: 32,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  14    2  0.06
  15   30  0.94

ACGTcount: A:0.30, C:0.42, G:0.04, T:0.24


Consensus pattern (15 bp):   
CCATCATTCCCTAAA

Found at i:267 original size:24 final size:24

Alignment explanation


    Indices: 235--296  Score: 124
    Period size: 24  Copynumber: 2.6  Consensus size: 24

        225 CATTCCCTAG

                                    
        235 ACCATCATTCCCAAAGCCATCCAT
          1 ACCATCATTCCCAAAGCCATCCAT

                                    
        259 ACCATCATTCCCAAAGCCATCCAT
          1 ACCATCATTCCCAAAGCCATCCAT

                          
        283 ACCATCATTCCCAA
          1 ACCATCATTCCCAA

        297 GGCGTGGGGT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   38  1.00

ACGTcount: A:0.34, C:0.42, G:0.03, T:0.21


Consensus pattern (24 bp):   
ACCATCATTCCCAAAGCCATCCAT
Done.