Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00496.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4301
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36


Found at i:1354 original size:27 final size:28

Alignment explanation


    Indices: 1310--1365  Score: 78
    Period size: 27  Copynumber: 2.0  Consensus size: 28

       1300 CTTGAACTAT

                       *       *        
       1310 AACTTCTTTTTTTAATTTTGGTACTTGA
          1 AACTTCTTTTTCTAATTTTAGTACTTGA

                         *              
       1338 AACTT-TTTTTCTCATTTTAGTACTTGA
          1 AACTTCTTTTTCTAATTTTAGTACTTGA

             
       1365 A
          1 A

       1366 TTATCATTTT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  27   20  0.80
  28    5  0.20

ACGTcount: A:0.23, C:0.12, G:0.09, T:0.55


Consensus pattern (28 bp):   
AACTTCTTTTTCTAATTTTAGTACTTGA
Done.