Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00506.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2694
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:1740 original size:12 final size:13

Alignment explanation


    Indices: 1723--1752  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       1713 TTTGTTTCAA

                         
       1723 TCTTCTCTTTCT-
          1 TCTTCTCTTTCTC

                         
       1735 TCTTCTCTTTCTC
          1 TCTTCTCTTTCTC

                 
       1748 TCTTC
          1 TCTTC

       1753 CCTCTAACTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63


Consensus pattern (13 bp):   
TCTTCTCTTTCTC
Done.