Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00516.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3085
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29


Found at i:1183 original size:20 final size:20

Alignment explanation


    Indices: 1138--1190  Score: 97
    Period size: 21  Copynumber: 2.6  Consensus size: 20

       1128 TCCTACAGCC

                                
       1138 ACTGTTTTTCCTGTTTTGGA
          1 ACTGTTTTTCCTGTTTTGGA

                                 
       1158 ACCTGTTTTTCCTGTTTTGGA
          1 A-CTGTTTTTCCTGTTTTGGA

                        
       1179 ACTGTTTTTCCT
          1 ACTGTTTTTCCT

       1191 ATCTCCACTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  20   12  0.38
  21   20  0.62

ACGTcount: A:0.09, C:0.19, G:0.17, T:0.55


Consensus pattern (20 bp):   
ACTGTTTTTCCTGTTTTGGA
Done.