Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00524.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31


Found at i:1319 original size:25 final size:25

Alignment explanation


    Indices: 1285--1333  Score: 80
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1275 CCGACACAAC

                 *    *              
       1285 CTTGGTTTTCGACACGATAGTTTTT
          1 CTTGGCTTTCAACACGATAGTTTTT

                                    
       1310 CTTGGCTTTCAACACGATAGTTTT
          1 CTTGGCTTTCAACACGATAGTTTT

       1334 CTTTTCCAAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45


Consensus pattern (25 bp):   
CTTGGCTTTCAACACGATAGTTTTT
Done.