Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00525.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1693
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25


Found at i:212 original size:12 final size:12

Alignment explanation


    Indices: 195--219  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        185 AAAGCAAAAG

                        
        195 ACAAGAAGAAGA
          1 ACAAGAAGAAGA

                        
        207 ACAAGAAGAAGA
          1 ACAAGAAGAAGA

             
        219 A
          1 A

        220 GCGTGGGGGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.68, C:0.08, G:0.24, T:0.00


Consensus pattern (12 bp):   
ACAAGAAGAAGA
Done.