Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00543.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29


Found at i:57 original size:2 final size:2

Alignment explanation


    Indices: 52--91  Score: 71
    Period size: 2  Copynumber: 20.0  Consensus size: 2

         42 TATATATATT

                                              *                        
         52 GA GA GA GA GA GA GA GA GA GA GA GT GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

         92 TGGGAGATAA


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.47, C:0.00, G:0.50, T:0.03


Consensus pattern (2 bp):   
GA

Done.