Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00544.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2242
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:109 original size:16 final size:15

Alignment explanation


    Indices: 68--110  Score: 50
    Period size: 15  Copynumber: 2.8  Consensus size: 15

         58 AAAAGAAATA

                     * *   
         68 CTTTTCTTTTCTTTT
          1 CTTTTCTTTCCCTTT

                  *        
         83 CTTTTCCTTCCCTTT
          1 CTTTTCTTTCCCTTT

                         
         98 CTTTTTCTTTCCC
          1 C-TTTTCTTTCCC

        111 ATCAACAATC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15   13  0.57
  16   10  0.43

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (15 bp):   
CTTTTCTTTCCCTTT
Done.