Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00570.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1052
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:641 original size:28 final size:28

Alignment explanation


    Indices: 609--666  Score: 98
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        599 AGCTTCCTAT

                          **            
        609 AATGGACTTTGGTGGGAAGAAAAGGAAA
          1 AATGGACTTTGGTGAAAAGAAAAGGAAA

                                        
        637 AATGGACTTTGGTGAAAAGAAAAGGAAA
          1 AATGGACTTTGGTGAAAAGAAAAGGAAA

              
        665 AA
          1 AA

        667 CAGCATCGTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.48, C:0.03, G:0.31, T:0.17


Consensus pattern (28 bp):   
AATGGACTTTGGTGAAAAGAAAAGGAAA
Done.