Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00582.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3538
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29


Found at i:865 original size:51 final size:51

Alignment explanation


    Indices: 721--871  Score: 128
    Period size: 51  Copynumber: 3.0  Consensus size: 51

        711 ATCTTTTTCA

                 *     *   *  *      *    *      *            *
        721 GGAAATTGTATTGAGCAAACCATCTAAGAAGTTACTCTCCAAGGAGAAAAC
          1 GGAAACTGTATCGAGGAAGCCATCTGAGAAATTACTCCCCAAGGAGAAAAT

                 *                      **       *             
        772 GGAAATTGTATC---GAAGCCATCTGAGGGATTACTCTCCAAGGAGAAAAT
          1 GGAAACTGTATCGAGGAAGCCATCTGAGAAATTACTCCCCAAGGAGAAAAT

                 *  *  *       *                  *            
        820 GGAAATTGAATGGAGGAAGTCATCTGAGAAATTACTCCACAAGGAGAAAAT
          1 GGAAACTGTATCGAGGAAGCCATCTGAGAAATTACTCCCCAAGGAGAAAAT

             
        871 G
          1 G

        872 CCTTTTCAGG


Statistics
Matches: 82,  Mismatches: 15, Indels: 6
        0.80            0.15        0.06

Matches are distributed among these distances:
  48   39  0.48
  51   43  0.52

ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21


Consensus pattern (51 bp):   
GGAAACTGTATCGAGGAAGCCATCTGAGAAATTACTCCCCAAGGAGAAAAT

Found at i:945 original size:54 final size:53

Alignment explanation


    Indices: 880--1040  Score: 227
    Period size: 54  Copynumber: 3.0  Consensus size: 53

        870 TGCCTTTTCA

                  *                      *                        
        880 GGAAACCGTATCGAGGAAGAAACCATCTGGGAAATTACTCCCCAAGGAGAAAAT
          1 GGAAACTGTATCGAGGAAG-AACCATCTGAGAAATTACTCCCCAAGGAGAAAAT

                                     *           *                
        934 GGAAACTGTATCGAGGAAGAAGCCAACTGAGAAATTAATCCCCAAGGAGAAAAT
          1 GGAAACTGTATCGAGGAAGAA-CCATCTGAGAAATTACTCCCCAAGGAGAAAAT

                   *    *                                  *     
        988 GGAAACTATATCAAGGAAG--CCATCTGAGAAATTACTCCCCAAGGAAAAAAT
          1 GGAAACTGTATCGAGGAAGAACCATCTGAGAAATTACTCCCCAAGGAGAAAAT

              
       1039 GG
          1 GG

       1041 TTGGGGAGTC


Statistics
Matches: 97,  Mismatches: 9, Indels: 5
        0.87            0.08        0.05

Matches are distributed among these distances:
  51   31  0.32
  53    2  0.02
  54   64  0.66

ACGTcount: A:0.43, C:0.19, G:0.23, T:0.16


Consensus pattern (53 bp):   
GGAAACTGTATCGAGGAAGAACCATCTGAGAAATTACTCCCCAAGGAGAAAAT

Done.