Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00583.F10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4172
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:3389 original size:92 final size:92

Alignment explanation


    Indices: 3227--3411  Score: 343
    Period size: 92  Copynumber: 2.0  Consensus size: 92

       3217 CCTTCCATCA

                                                                             
       3227 GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG
          1 GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG

            *                      *   
       3292 CTTCATCAGGCTAATAAGAGAGGGGAT
         66 ATTCATCAGGCTAATAAGAGAGGAGAT

                      *                                                      
       3319 GTTGGAAATTTTGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG
          1 GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG

                                       
       3384 ATTCATCAGGCTAATAAGAGAGGAGAT
         66 ATTCATCAGGCTAATAAGAGAGGAGAT

             
       3411 G
          1 G

       3412 CCTGGTTTTT


Statistics
Matches: 90,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  92   90  1.00

ACGTcount: A:0.38, C:0.11, G:0.25, T:0.25


Consensus pattern (92 bp):   
GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG
ATTCATCAGGCTAATAAGAGAGGAGAT
Done.