Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga02g00763.N1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705
Length: 1176
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Found at i:1092 original size:179 final size:169
Alignment explanation
Indices: 789--1132 Score: 449
Period size: 179 Copynumber: 2.0 Consensus size: 169
779 TTAAATATAC
* * * *
789 ATTTGGCTGCTGAATTTGCACTTTCTCCCAAGTTAGATGCTTTTTTTCTAACTTGGTATCTAGGT
1 ATTTGGCTACTGAATTTGCACTTTCTCCCAAGTTAGATACTTTTTTTCCAACTTGGTATCTAGAT
854 TAGTGGTACTTTTTTACAACTACAGTAATGACGAGACAAGTGGTATTGATAGAGTTGTTTTAGTT
66 TAGTGGTACTTTTTTACAACTACAGTAATGACGAGACAAGT-GTATTGATAGAGTTGTTTT-G--
* *
919 TTAGATGAGGTGTGTATTTATTTATAATTAGTGTAAAAATAATTAT
127 ---GATGAAGTGTGTATTTAGTTATAATTAGTGTAAAAATAATTAT
*
965 ATTTGGCTACTGAATTTGCACTTTCTCCCAAGTTAGATACTTTTTTTTTTCCAACTTGGTATCTT
1 ATTTGGCTACTGAATTTGCACTTTCTCCCAAGTTAGATAC---TTTTTTTCCAACTTGGTATCTA
* * *
1030 GATTAGTGGTACTTTTTTACAAC-ACCATTAATGACGAGACATTAGT-TATTGTTAGGGTTGTTT
63 GATTAGTGGTACTTTTTTACAACTA-CAGTAATGACGAGACA--AGTGTATTGATAGAGTTGTTT
* *
1093 TGGATGAATTGTGTATTTAGTTATAGTTAGTGTAAAAATA
125 TGGATGAAGTGTGTATTTAGTTATAATTAGTGTAAAAATA
1133 GTAGTGACGG
Statistics
Matches: 150, Mismatches: 12, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
173 34 0.23
176 38 0.25
178 2 0.01
179 73 0.49
181 3 0.02
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (169 bp):
ATTTGGCTACTGAATTTGCACTTTCTCCCAAGTTAGATACTTTTTTTCCAACTTGGTATCTAGAT
TAGTGGTACTTTTTTACAACTACAGTAATGACGAGACAAGTGTATTGATAGAGTTGTTTTGGATG
AAGTGTGTATTTAGTTATAATTAGTGTAAAAATAATTAT
Done.