Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00584.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4020
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:3226 original size:92 final size:92

Alignment explanation


    Indices: 3064--3248  Score: 343
    Period size: 92  Copynumber: 2.0  Consensus size: 92

       3054 CCTTCCATCA

                                                                             
       3064 GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG
          1 GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG

            *                      *   
       3129 CTTCATCAGGCTAATAAGAGAGGGGAT
         66 ATTCATCAGGCTAATAAGAGAGGAGAT

                      *                                                      
       3156 GTTGGAAATTTTGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG
          1 GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG

                                       
       3221 ATTCATCAGGCTAATAAGAGAGGAGAT
         66 ATTCATCAGGCTAATAAGAGAGGAGAT

             
       3248 G
          1 G

       3249 CCTGGTTTTT


Statistics
Matches: 90,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  92   90  1.00

ACGTcount: A:0.38, C:0.11, G:0.25, T:0.25


Consensus pattern (92 bp):   
GTTGGAAATTATGAGGATAAAGATGTAATGGACTATGACAATGATCCTAAAACAGAGTTTCAACG
ATTCATCAGGCTAATAAGAGAGGAGAT
Done.