Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00589.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3208
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:2900 original size:22 final size:22

Alignment explanation


    Indices: 2875--2935  Score: 88
    Period size: 22  Copynumber: 2.8  Consensus size: 22

       2865 ATAACTTGTA

                              **  
       2875 TAAAAAGTATTATTAAATCTAT
          1 TAAAAAGTATTATTAAATAAAT

                  *               
       2897 TAAAAAATATTATTAAATAAAT
          1 TAAAAAGTATTATTAAATAAAT

                              
       2919 T-AAAAGTATTATTAAAT
          1 TAAAAAGTATTATTAAAT

       2936 TTTAAAGTAC


Statistics
Matches: 35,  Mismatches: 4, Indels: 1
        0.88            0.10        0.03

Matches are distributed among these distances:
  21   15  0.43
  22   20  0.57

ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39


Consensus pattern (22 bp):   
TAAAAAGTATTATTAAATAAAT
Done.