Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00765.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3271
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:2293 original size:41 final size:41

Alignment explanation


    Indices: 2236--2317  Score: 155
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       2226 GCAAGAATGC

                       *                             
       2236 CGTTGATTATAGTGTACCATGTTTGAGAACTGAACTAAGTG
          1 CGTTGATTATAATGTACCATGTTTGAGAACTGAACTAAGTG

                                                     
       2277 CGTTGATTATAATGTACCATGTTTGAGAACTGAACTAAGTG
          1 CGTTGATTATAATGTACCATGTTTGAGAACTGAACTAAGTG

       2318 AAGTGGCAAA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   40  1.00

ACGTcount: A:0.30, C:0.12, G:0.23, T:0.34


Consensus pattern (41 bp):   
CGTTGATTATAATGTACCATGTTTGAGAACTGAACTAAGTG
Done.