Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00768.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1580
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30


Found at i:1574 original size:30 final size:30

Alignment explanation


    Indices: 1518--1576  Score: 75
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1508 ATAATGCCAA

                        * *      *        
       1518 TACTTATACTTTGATAAAATTTAAATTAAG
          1 TACTTATACTTTAAAAAAATTAAAATTAAG

                                          
       1548 TACTTATA-TTTAAAAAAATTAAAAATTAA
          1 TACTTATACTTTAAAAAAATT-AAAATTAA

       1577 ATCC


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  29   10  0.40
  30   15  0.60

ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41


Consensus pattern (30 bp):   
TACTTATACTTTAAAAAAATTAAAATTAAG
Done.