Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00615.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5502
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:2397 original size:19 final size:19

Alignment explanation


    Indices: 2373--2410  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       2363 GAAGTAGGCT

                               
       2373 TGAAAATTTAATGCATAAA
          1 TGAAAATTTAATGCATAAA

                               
       2392 TGAAAATTTAATGCATAAA
          1 TGAAAATTTAATGCATAAA

       2411 ATTTAGTTAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32


Consensus pattern (19 bp):   
TGAAAATTTAATGCATAAA
Done.