Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00617.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2840
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:2648 original size:31 final size:31

Alignment explanation


    Indices: 2613--2675  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2603 CTTTGTCTTC

                                           
       2613 AATCCGACCCTAGACTTTTCTTCACCTTTGA
          1 AATCCGACCCTAGACTTTTCTTCACCTTTGA

                                           
       2644 AATCCGACCCTAGACTTTTCTTCACCTTTGA
          1 AATCCGACCCTAGACTTTTCTTCACCTTTGA

             
       2675 A
          1 A

       2676 TGCTGATAGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.24, C:0.32, G:0.10, T:0.35


Consensus pattern (31 bp):   
AATCCGACCCTAGACTTTTCTTCACCTTTGA
Done.