Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00619.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3958
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:2607 original size:39 final size:40

Alignment explanation


    Indices: 2530--2611  Score: 123
    Period size: 40  Copynumber: 2.1  Consensus size: 40

       2520 ATTCCACAGC

                                  *                 
       2530 ACTTCATTTATTCAGTATACATCCTCTGGTGTCAAGTCAA
          1 ACTTCATTTATTCAGTATACATACTCTGGTGTCAAGTCAA

                *                                    
       2570 ACTTTATTTATTCAGTATACA-ACTCTGGT-TCCAAGTCAA
          1 ACTTCATTTATTCAGTATACATACTCTGGTGT-CAAGTCAA

               
       2609 ACT
          1 ACT

       2612 CATGCTGAAA


Statistics
Matches: 39,  Mismatches: 2, Indels: 3
        0.89            0.05        0.07

Matches are distributed among these distances:
  38    1  0.03
  39   18  0.46
  40   20  0.51

ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38


Consensus pattern (40 bp):   
ACTTCATTTATTCAGTATACATACTCTGGTGTCAAGTCAA
Done.