Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00774.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.35


Found at i:1338 original size:16 final size:16

Alignment explanation


    Indices: 1319--1349  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1309 ATTCTATCAT

                     *      
       1319 TATTTTGTTCTATTTG
          1 TATTTTGTTATATTTG

                           
       1335 TATTTTGTTATATTT
          1 TATTTTGTTATATTT

       1350 CTGGTGTAGT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.16, C:0.03, G:0.10, T:0.71


Consensus pattern (16 bp):   
TATTTTGTTATATTTG
Done.