Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00622.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 225

Length: 376
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34


Found at i:312 original size:22 final size:22

Alignment explanation


    Indices: 284--331  Score: 87
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        274 TGTTATATTG

                               *  
        284 TTTGTCAATAATTGTAATTTTC
          1 TTTGTCAATAATTGTAATTCTC

                                  
        306 TTTGTCAATAATTGTAATTCTC
          1 TTTGTCAATAATTGTAATTCTC

                
        328 TTTG
          1 TTTG

        332 AACCTCACTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.25, C:0.10, G:0.10, T:0.54


Consensus pattern (22 bp):   
TTTGTCAATAATTGTAATTCTC
Done.