Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00634.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1356
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25


Found at i:163 original size:14 final size:14

Alignment explanation


    Indices: 144--170  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        134 AGAAGCACCG

                          
        144 AGAAAAAGAAAAAA
          1 AGAAAAAGAAAAAA

                         
        158 AGAAAAAGAAAAA
          1 AGAAAAAGAAAAA

        171 GTAAGAGAAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (14 bp):   
AGAAAAAGAAAAAA
Done.