Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00777.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3142
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32


Found at i:1155 original size:4 final size:4

Alignment explanation


    Indices: 1146--1186  Score: 57
    Period size: 4  Copynumber: 10.2  Consensus size: 4

       1136 GTTACTAGGG

                                                      *         
       1146 TGTT TGTT TGTT TGTT TGTT TGTT GTGTT T-TT TTTT TGTT T
          1 TGTT TGTT TGTT TGTT TGTT TGTT -TGTT TGTT TGTT TGTT T

       1187 TTGTTCTTTT


Statistics
Matches: 34,  Mismatches: 1, Indels: 4
        0.87            0.03        0.10

Matches are distributed among these distances:
   3    3  0.09
   4   27  0.79
   5    4  0.12

ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78


Consensus pattern (4 bp):   
TGTT

Found at i:2440 original size:14 final size:14

Alignment explanation


    Indices: 2421--2450  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2411 TATATTAAAC

                       *  
       2421 TCTTTTTTTCTTTT
          1 TCTTTTTTTCTCTT

                          
       2435 TCTTTTTTTCTCTT
          1 TCTTTTTTTCTCTT

              
       2449 TC
          1 TC

       2451 CAAGTTATAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (14 bp):   
TCTTTTTTTCTCTT
Done.