Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00685.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1135
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28


Found at i:81 original size:26 final size:25

Alignment explanation


    Indices: 24--81  Score: 64
    Period size: 26  Copynumber: 2.2  Consensus size: 25

         14 ATCGCTCCAA

                                    * 
         24 GAAAGAGAAATTTCTTGAAAGAAATC
          1 GAAAGAGAAATTTCTTG-AAGAAAAC

             *                         
         50 GGAAGAGAAATATTCTCTG-AGAAAAC
          1 GAAAGAGAAAT-TTCT-TGAAGAAAAC

                  
         76 GAAAGA
          1 GAAAGA

         82 AGAAGAAAGA


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  26   21  0.78
  27    4  0.15
  28    2  0.07

ACGTcount: A:0.50, C:0.09, G:0.22, T:0.19


Consensus pattern (25 bp):   
GAAAGAGAAATTTCTTGAAGAAAAC
Done.