Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00691.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4656
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1317 original size:16 final size:16

Alignment explanation


    Indices: 1296--1327  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1286 TATGTTGCTA

                            
       1296 AAATAAAGCTATCAAT
          1 AAATAAAGCTATCAAT

                            
       1312 AAATAAAGCTATCAAT
          1 AAATAAAGCTATCAAT

       1328 CTTCTTACAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.56, C:0.12, G:0.06, T:0.25


Consensus pattern (16 bp):   
AAATAAAGCTATCAAT
Done.