Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00698.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4298
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34


Found at i:4289 original size:17 final size:17

Alignment explanation


    Indices: 4264--4296  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       4254 TTTCTCGAAG

                *            
       4264 TTAATTTATTTATTTAT
          1 TTAAGTTATTTATTTAT

                            
       4281 TTAAGTTATTTATTTA
          1 TTAAGTTATTTATTTA

       4297 AG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67


Consensus pattern (17 bp):   
TTAAGTTATTTATTTAT

Found at i:4291 original size:13 final size:13

Alignment explanation


    Indices: 4273--4298  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       4263 GTTAATTTAT

                         
       4273 TTATTTATTTAAG
          1 TTATTTATTTAAG

                         
       4286 TTATTTATTTAAG
          1 TTATTTATTTAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62


Consensus pattern (13 bp):   
TTATTTATTTAAG
Done.