Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00699.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1243
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:346 original size:21 final size:21

Alignment explanation


    Indices: 313--354  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        303 TGATTCTGCC

                 *          *    
        313 AAGGATCTGAAAGCAAGAGAG
          1 AAGGAACTGAAAGCAAAAGAG

                    *            
        334 AAGGAACTTAAAGCAAAAGAG
          1 AAGGAACTGAAAGCAAAAGAG

        355 GCTGAACTGA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.52, C:0.10, G:0.29, T:0.10


Consensus pattern (21 bp):   
AAGGAACTGAAAGCAAAAGAG
Done.