Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00708.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2772
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33


Found at i:329 original size:21 final size:21

Alignment explanation


    Indices: 305--345  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        295 TTTCTTTCGT

                    *             
        305 AATCTTTATTCTT-TTTAATTC
          1 AATCTTT-CTCTTCTTTAATTC

                                
        326 AATCTTTCTCTTCTTTAATT
          1 AATCTTTCTCTTCTTTAATT

        346 GTTTTTTCCT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    4  0.22
  21   14  0.78

ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61


Consensus pattern (21 bp):   
AATCTTTCTCTTCTTTAATTC
Done.