Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00715.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1983
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32


Found at i:1164 original size:12 final size:12

Alignment explanation


    Indices: 1149--1181  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       1139 GGCTGTTGCT

                        
       1149 GCTGCTGCTGCA
          1 GCTGCTGCTGCA

                        
       1161 GCTGCTGCTGCA
          1 GCTGCTGCTGCA

               *     
       1173 GCTACTGCT
          1 GCTGCTGCT

       1182 TCCTCCGATA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.09, C:0.33, G:0.30, T:0.27


Consensus pattern (12 bp):   
GCTGCTGCTGCA
Done.