Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00738.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4068
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1628 original size:16 final size:17

Alignment explanation


    Indices: 1589--1630  Score: 52
    Period size: 16  Copynumber: 2.5  Consensus size: 17

       1579 TTAAGTTGCA

                              
       1589 TTCTTTGGCTCATTTTCG
          1 TTCTTT-GCTCATTTTCG

                            *
       1607 TT-TTTGCTC-TTTTCT
          1 TTCTTTGCTCATTTTCG

                     
       1622 TTCTTTGCT
          1 TTCTTTGCT

       1631 TAAGCATCAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  15    7  0.32
  16   10  0.45
  17    3  0.14
  18    2  0.09

ACGTcount: A:0.02, C:0.21, G:0.12, T:0.64


Consensus pattern (17 bp):   
TTCTTTGCTCATTTTCG
Done.