Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00740.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2857
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26


Found at i:2345 original size:3 final size:3

Alignment explanation


    Indices: 2334--2383  Score: 55
    Period size: 3  Copynumber: 16.7  Consensus size: 3

       2324 GCAGCTTTCC

                 *            *   *   *   *                                
       2334 CAG CTG CAG CAG CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG CAG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG

              
       2382 CA
          1 CA

       2384 ACAACAGTCG


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   3   43  1.00

ACGTcount: A:0.40, C:0.34, G:0.24, T:0.02


Consensus pattern (3 bp):   
CAG

Done.